Center for Genome Dynamics Mouse SNP Database

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Build 37 SNPs Summary
Total :   9,686,537
Transition:   6,607,155
Transversion:   3,079,382
Intergenic:   5,617,609
Genic:   4,068,928
Intronic:   3,850,229
Exonic:   247,920
UTR:   112,067
CDS:   126,078
Synon:   85,090
Non-Synon:   43,698
Announcements
  • September 2010

    • SNP database v1.4 maintenance release
Select Strains
          
  • 129P1/ReJ
  • 129P2/OlaHsd
  • 129P3/J
  • 129S1/SvlmJ
  • 129S4/SvJae
  • 129S5/SvEvBrd
  • 129S6
  • 129S6/SvEvTac
  • 129SBE-M
  • 129T2/SvEmsJ
  • 129X1/SvJ
  • A/J
  • A/WySnJ
  • AEJ/Gn
  • AEJ/GnRk a[e]/a[e]
  • AKR/J
  • ALR
  • ALS/LtJ
  • BALB/cByJ
  • BALB/cJ
  • BDP/J
  • BPH/2J
  • BPL/1J
  • BPN/3J
  • BTBR T<+>tf/J
  • BUB/BnJ
  • BXSB/MpJ
  • C3H/HeJ
  • C3HeB/FeJ
  • C57BL/10J
  • C57BL/10ScNJ
  • C57BL/10ScSnJ
  • C57BL/6CR
  • C57BL/6J
  • C57BL/6JN
  • C57BL/6NCI
  • C57BL/6Tc
  • C57BLKS/J
  • C57BR/cdJ
  • C57L/J
  • C58/J
  • CALB/RK
  • CAST/EiJ
  • CBA/CaJ
  • CBA/J
  • CE/J
  • CHMU/LeJ
  • CZECHII/EiJ
  • DBA/1J
  • DBA/1LacJ
  • DBA/2DeJ
  • DBA/2HaSmnJ
  • DBA/2J
  • DDK
  • DDK/Pas
  • DDY/JCLSIDSEYFRKJ
  • DLS/LeJ
  • EL/SuzSeyFrkJ
  • FVB/NJ
  • HPG/BmJ
  • I/LnJ
  • IBWSP2
  • IBWSR2
  • ICOLD2
  • IHOT1
  • IHOT2
  • ILS
  • ILS/IbgTejJ
  • IS/CAMRK
  • ISS
  • ISS/IbgTejJ
  • JE/LeJ
  • JF1/Ms
  • KK/HlJ
  • LEWES/EI
  • LEWES/EiJ
  • LG/J
  • LP/J
  • LT/SvEiJ
  • MA/MyJ
  • MAI/Pas
  • MOLF/EiJ
  • MOLG/DN
  • MRL/MpJ
  • MSM/Ms
  • NOD/LtJ
  • NOD/ShiLtJ
  • NON/LtJ
  • NON/ShiLtJ
  • NONcNZO10/LtJ
  • NONcNZO5/LtJ
  • NOR/LTJ
  • NU/J
  • NZB/BlNJ
  • NZL/LtJ
  • NZM2410/J
  • NZO/HlLtJ
  • NZW/LacJ
  • O20
  • P/J
  • PANCEVO/EiJ
  • PERA/EiJ
  • PERC/EI
  • PL/J
  • PN/nBSwUmabJ
  • PN/nBSWUmaDJ
  • PWD/PhJ
  • PWK/PhJ
  • Qsi5
  • RBF/DnJ
  • RF/J
  • RHJ/LeJ
  • RIII/2J
  • RIIIS/J
  • RSV/LeJ
  • SB/LeJ
  • SEA/GnJ
  • SEC/1GnLeJ
  • SEC/1ReJ
  • SEG/Pas
  • SH1/LeJ
  • SI/Col Tyrp1 Dnahc11/J
  • SI/ColTyrp1bDnahc11iv/J
  • SJL
  • SJL/Bm
  • SJL/J
  • SKIVE
  • SKIVE/EI
  • SM/J
  • SOD1/EI
  • SPRET/EiJ
  • SSL/LeJ
  • ST/bJ
  • STX/Le
  • SWR
  • SWR/J
  • TALLYHO/JNGJ
  • TKDU/DnJ
  • TSJ/LeJ
  • WSB/EiJ
  • xxxx
  • YBR/EiJ
  • YBR/Ki
  • ZALENDE/EI
  • ZRDCT Rax<+>ChUmdJ
Options
Result Format :    
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SNP Source  ( Strains: SNPs )
  • Imputed (74 :7,867,856)
  • MusDiv Diversity Array - Yang et al.2009 (72 :548,363)
  • NIEHS (16 :8,230,026)
  • GNF (74 :155,749)
  • Paigen (50 :24,608)
  • Celera (5 :2,122,059)
  • Wild Derived (12 :667)
  • Broad (49 :138,594)