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CGD Mouse SNPs Query Form
(The reference strain is C57BL/6J (black6))
Sample Queries:
10:74892138-75006669,11:64992138-65006669
11:64992214,11:64994598,3:3900000-4000000
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Search for SNPs by Genome location,Gene Annotations,SNP amino acid implication, Minor allele frequency,Strains,SNP source, etc.
You can browse our snp data summary by clicking on :
CGD SNP Data Report
SNPs Source
Select source(s)
Perlegen
GNF
Broad
Imputed
Gene Annotations
Any
Any Exons
Exon Coding(CDS)
CDS-Synonymous coding
CDS- NonSynonymous coding
CDS-Stop Gained
CDS-Stop Lost
CDS-Start Gained
CDS-Start Lost
3'UTR
5'UTR
Introns
Intergenic Regions
Minor Allele Frequency
( count strains with minor allele)
Exclude Minor Allele count:
<=1
<=2
<=3
<=4
<=5
None
Exclude Ns count of
>=1
>=2
>=3
>=4
>=5
None
SNP Strain
Available Strain(s)
Any
129S1/SvImJ
129S4/SvJae
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BALB/cJ
BPH/2J
BPL/1J
BPN/3J
BTBR T+ tf/J
BUB/BnJ
C3H/HeJ
C57BL/10J
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CALB/RK
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
DDY/JCLSIDSEYFRKJ
EL/SUZ_2
FVB/NJ
HTG/GOSFSN
I/LnJ
ILS
IS/CAMRK
ISS
JF1/Ms
KK/HlJ
LEWES/EI
LG/J
LP/J
MA/MyJ
MAI/Pas
MOLF/EiJ
MOLG/DN
MRL/MpJ
MSM/Ms
NOD/LtJ
NON/LtJ
NOR/LTJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
O20
P/J
PERA/EiJ
PERC/EI
PL/J
PWD/PhJ
PWK/PhJ
Qsi5
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SKIVE/EI
SM/J
SOD1/EI
SPRET/EiJ
ST/bJ
SWR/J
TALLYHO/JNGJ
WSB/EiJ
ZALENDE/EI
Selected Strains
Sort Strains
Results type
Summary Report
Include Genotype
Include Confidence Score
Output options
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Format
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SNPs Home
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