Center for Genome Dynamics Mouse SNP Database
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Strains By Source
How to use this tool
Build 37 SNPs Summary
Total :
66,028,809
Transition:
42,744,395(65%)
Transversion:
23,284,436(35%)
Intergenic:
38,919,578(59%)
On Transcript:
27,109,231(41%)
Intronic:
26,102,091
;
Exonic:
1,102,004
UTR:
699,677
;
Synonymous:
290,014
Non-Synonymous:
161,260
Announcements
August 2012
SNP database v1.5 maintenance release
SNP Source ( Strains: SNPs )
Diversity Array - Yang et al.2011 (100 :549,645)
Imputed - Jeremy R. Wang et al. 2012 (105 :65,243,635)
Imputed - Szatkiewicz et al.2008 (73 :7,867,995)
NIEHS (16 :8,224,916)
Select Strains
CC Founders
Classical Strains
Select all
Unselect all
129P1/ReJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
129P2/OlaHsd
Provided By:
Imputed - Jeremy R. Wang et al. 2012
129P3/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
129S1/SvlmJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
NIEHS
129S4/SvJae
Provided By:
Imputed - Szatkiewicz et al.2008
129S5/SvEvBrd
Provided By:
Imputed - Jeremy R. Wang et al. 2012
129S6
Provided By:
Diversity Array - Yang et al.2011
129S6/SvEvTac
Provided By:
Imputed - Jeremy R. Wang et al. 2012
129T2/SvEmsJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
129X1/SvJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
A/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
A/WySnJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
AEJ/Gn
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
AEJ/GnRk a[e]/a[e]
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
AKR/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
ALR
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
ALS/LtJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
BALB/cByJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
BALB/cJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
BDP/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
BPH/2J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
BPL/1J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
BPN/3J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
BTBR T<+>tf/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
BUB/BnJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
BXSB/MpJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
C3H/HeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
C3HeB/FeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
C57BL/10J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
C57BL/10ScNJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
C57BL/10ScSnJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
C57BL/6CR
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
C57BL/6J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Szatkiewicz et al.2008
NIEHS
C57BL/6JN
Provided By:
Imputed - Jeremy R. Wang et al. 2012
C57BL/6NCI
Provided By:
Diversity Array - Yang et al.2011
C57BL/6Tc
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
C57BLKS/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
C57BR/cdJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
C57L/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
C58/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
CALB/RK
Provided By:
Imputed - Szatkiewicz et al.2008
CAST/EiJ
Provided By:
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
CBA/CaJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
CBA/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
CE/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
CHMU/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
CZECHII/EiJ
Provided By:
Imputed - Szatkiewicz et al.2008
DBA/1J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
DBA/1LacJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
DBA/2DeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
DBA/2HaSmnJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
DBA/2J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
DDK
Provided By:
Imputed - Jeremy R. Wang et al. 2012
DDK/Pas
Provided By:
Diversity Array - Yang et al.2011
Imputed - Szatkiewicz et al.2008
DDY/JCLSIDSEYFRKJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
DLS/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
EL/SuzSeyFrkJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
FVB/NJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
HPG/BmJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
I/LnJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
IBWSP2
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
IBWSR2
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
ICOLD2
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
IHOT1
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
IHOT2
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
ILS
Provided By:
Diversity Array - Yang et al.2011
Imputed - Szatkiewicz et al.2008
ILS/IbgTejJ
Provided By:
Imputed - Jeremy R. Wang et al. 2012
IS/CAMRK
Provided By:
Imputed - Szatkiewicz et al.2008
ISS
Provided By:
Diversity Array - Yang et al.2011
Imputed - Szatkiewicz et al.2008
ISS/IbgTejJ
Provided By:
Imputed - Jeremy R. Wang et al. 2012
JE/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
JF1/Ms
Provided By:
Imputed - Szatkiewicz et al.2008
KK/HlJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
LEWES/EI
Provided By:
Imputed - Szatkiewicz et al.2008
LEWES/EiJ
Provided By:
Imputed - Szatkiewicz et al.2008
LG/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
LP/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
LT/SvEiJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
MA/MyJ
Provided By:
Imputed - Szatkiewicz et al.2008
MAI/Pas
Provided By:
Imputed - Szatkiewicz et al.2008
MOLF/EiJ
Provided By:
Imputed - Szatkiewicz et al.2008
NIEHS
MOLG/DN
Provided By:
Imputed - Szatkiewicz et al.2008
MRL/MpJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
MSM/Ms
Provided By:
Imputed - Szatkiewicz et al.2008
NOD/ShiLtJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
NON/LtJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NONcNZO10/LtJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
NONcNZO5/LtJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
NOR/LTJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NU/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
NZB/BlNJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NZL/LtJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
NZM2410/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
NZO/HlLtJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NZW/LacJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
O20
Provided By:
Imputed - Szatkiewicz et al.2008
P/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
PERA/EiJ
Provided By:
Imputed - Szatkiewicz et al.2008
PERC/EI
Provided By:
Imputed - Szatkiewicz et al.2008
PL/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
PN/nBSwUmabJ
Provided By:
Diversity Array - Yang et al.2011
PN/nBSWUmaDJ
Provided By:
Imputed - Jeremy R. Wang et al. 2012
PWD/PhJ
Provided By:
Imputed - Szatkiewicz et al.2008
NIEHS
PWK/PhJ
Provided By:
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
Qsi5
Provided By:
Imputed - Szatkiewicz et al.2008
RF/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
RHJ/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
RIIIS/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
RSV/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
SB/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
SEA/GnJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
SEC/1GnLeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
SEC/1ReJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
SEG/Pas
Provided By:
Imputed - Szatkiewicz et al.2008
SH1/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
SI/Col Tyrp1 Dnahc11/J
Provided By:
Diversity Array - Yang et al.2011
SI/ColTyrp1bDnahc11iv/J
Provided By:
Imputed - Jeremy R. Wang et al. 2012
SJL/Bm
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
SJL/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
SKIVE/EI
Provided By:
Imputed - Szatkiewicz et al.2008
SM/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
SOD1/EI
Provided By:
Imputed - Szatkiewicz et al.2008
SPRET/EiJ
Provided By:
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
SSL/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
ST/bJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
STX/Le
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
SWR/J
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
TALLYHO/JNGJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
TKDU/DnJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
TSJ/LeJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
WSB/EiJ
Provided By:
Imputed - Jeremy R. Wang et al. 2012
Imputed - Szatkiewicz et al.2008
NIEHS
YBR/EiJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
ZALENDE/EI
Provided By:
Imputed - Szatkiewicz et al.2008
ZRDCT Rax<+>ChUmdJ
Provided By:
Diversity Array - Yang et al.2011
Imputed - Jeremy R. Wang et al. 2012
Enter Search term
(?)
You can query using the following terms:
Ensembl Ids :
gene id, transcript, protein id (ENSMUSG00000015202)
MGI genes :
gene id, gene name (Cnksr3)
Entrez Gene :
gene id(215748)
Single chromosome:bpPosition (bp or Mbp) :
10:3134603
Genomic range chromosome:Position1-Position2 (bp or Mbp) :
10: 3134304 - 3227479 OR 10: 3.1 - 3.2
SNP accession id :
NES15060003,rs37624946,or JAX00014331
Result Options
Format :
HTML
CSV
Max Rows/Page:
100
200
300
500
1000
SNP Location/Annotation
Select SNP Classification
Intronic
Exon All(Syn, NonSyn,UTR)
Coding Synonymous
Coding Non Synonymous
UTR
Include In Output Columns:
Variation Type
Gene Name
Function Class
CpG Sites
Minor Allele%
Missing Genotype%
Remove SNPs with no variation for selected strains: