Our mouse(NCBI Build 36) SNP search engine takes the following terms:

  • Ensembl Genes i.e ENSMUSG00000053211
  • Ensembl Transcripts i.e ENSMUST00000065545
  • MGI gene_accessions i.e MGI:99213
  • MGI gene_symbols i.e Zfy1
  • Single base pair SNP(chromosome:bp_position) i.e 4:20266796
  • Base pair range SNP query i.e 4:20231103-20575856
  • Perlegen SNP ids i.e NES08626062
  • Broad SNP ids i.e mm33-2-87850569
  • GNF SNP ids i.e GNF3-011603
  • dbSNP rs ids i.e rs13476298
  • SS ids i.e 38506440
Query For SNP

ANNOUNCEMENTS

  • February 2009

    • SNP database 1.2 maintenance release

  • March 2009

    • 74 Strains Imputed SNP release
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Single nucleotide polymorphisms (SNPs) are an important tool to study genetic variations.We present CGDSNP, a high quality mouse SNP database with more than 8 Million SNPs from 74 strains of laboratory mice, drawn from several sources. You can search for SNP by genome location,gene Annotations,SNP amino acid implication, minor allele frequency,strains,SNP source (see:Database Report)
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SNP Source
Gene Annotations
Minor Allele Frequency(MAF)
(% strains with minor allele)


Mouse Strain(s)
(The reference strain is C57BL/6J (black6))
Available Strain(s)



 Selected Strains
 Sort Strains
Results type Summary Report Include Genotype Include Confidence Score
Output options Maximum results per page Format

CGDSNP : A high quality Mouse SNP database(NCBI BUILD 36)