Datasets - By Publication


 2014  2012   2011  2010   2009   2008   2007   2006  In Press/Prep 

In Prep/Press

Verdugo RA, Paigen BJ, Churchill GA.
A survey of gene expression in 17 mouse tissues with biological replication
in prepration [ datasets ]


Daniel M. Gatti, Karen L. Svenson, Andrey Shabalin, Long-Yang Wu, William Valdar, Petr Simecek, Neal Goodwin, Riyan Cheng, Daniel Pomp, Abraham Palmer, Elissa J. Chesler, Karl W. Broman, Gary A. Churchill
Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice
G3 (Bethesda). 2014 Sep 18;4(9):1623-33. doi: 10.1534/g3.114.013748. [ datasets ]


Churchill GA, Gatti DM, Munger SC, Svenson KL
The Diversity Outbred Mouse Population
Mammalian Genome 2012 Aug 15. [Epub ahead of print] [ datasets ]

Didion JP, Yang H, Sheppard K, Fu CP, McMillan L, Pardo-Manuel de Villena F, Churchill GA
Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
BMC Genomics. 2012 Jan 19;13(1):34. PMCID: PMC3305361 [ Full Text ] [ software ] [ datasets 1 ] [ datasets 2 ]

Kelada SNP, Aylor DL, Peck BCE, Ryan JF, Tavarez U, Buus RJ, Miller DR, Chesler EJ, Threadgill DW, Churchill GA, Pardo-Manuel de Villena F, Collins FS.
Genetic Analysis of Hematologic Parameters in Incipient Lines of the Collaborative Cross
G3 (Bethesda). 2012 Feb;2(2):157-65. PMCID: PMC3284323 [ Full Text ] [ datasets ]

Lenarcic AB, Svenson KL, Churchill GA, Valdar W.
A General Bayesian Approach to Analyzing Diallel Crosses of Inbred Strains
Genetics. 2012 Feb;190(2):413-35. PMCID: PMC3276624 [ Full Text ] [ datasets ] [ software ]

Phifer-Rixey M, Bonhomme F, Boursot P, Churchill GA, Piálek J, Tucker P, Nachman M.
Adaptive evolution and effective population size in wild house mice
Mol Biol Evol. 2012 Oct;29(10):2949-55. PMCID: PMC3457769 [Available on 2013/10/1] [ datasets ]

Svenson KL, Gatti DM, Valdar W, Welsh CE, Cheng R, Chesler EJ, Palmer AA, McMillan L, Churchill GA.
High-Resolution Genetic Mapping Using the Mouse Diversity Outbred Population
Genetics. 2012 Feb;190(2):437-47. PMCID: PMC3276626 [Available on 2013/2/1] [ datasets ]

Walker MB, King BL, Paigen K.
Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species
PLoS One. 2012;7(4):e35274. PMCID: PMC3338513 [ Full Text ] [ datasets ]

Wang JR, Pardo-Manuel de Villena F, Lawson HA, Cheverud JM, Churchill GA, McMillan L.
Computation of Single-Nucleotide Polymorphisms in Inbred Mice Using Local Phylogeny
Genetics. 2012 Feb;190(2):449-58. PMCID: PMC3276610 [Available on 2013/2/1] [ datasets ] [ software ]

Zhang W, Korstanje R, Thaisz J, Staedtler F, Harttman N, Xu L, Feng M, Yanas L, Yang H, Valdar W, Churchill GA, DiPetrillo K.
Genome-Wide Association Mapping of Quantitative Traits in Outbred Mice
G3 (Bethesda). 2012 Feb;2(2):167-74. PMCID: PMC3284324 [ Full Text ] [ datasets ]


Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, Powell CL, Steigerwalt J, Xie Y, Kelada SN, Collins FS, Yang IV, Schwartz DA, Branstetter LA, Chesler EJ, Miller DR, Spence J, Liu EY, McMillan L, Sarkar A, Wang J, Wang W, Zhang Q, Broman KW, Korstanje R, Durrant C, Mott R, Iraqi FA, Pomp D, Threadgill D, Pardo-Manuel de Villena F, Churchill GA.
Genetic analysis of complex traits in the emerging collaborative cross
Genome Res. 2011 Aug;21(8):1223-38. PMCID: PMC3149489 [ Full Text ] [ datasets ]

Hageman RS, Leduc MS, Caputo CR, Tsaih SW, Churchill GA, Korstanje R.
Uncovering Genes and Regulatory Pathways Related to Urinary Albumin Excretion
J Am Soc Nephrol. 2011 Jan;22(1):73-81. PMCID: PMC3014036 [ Full Text ] [ datasets ]

Hageman RS, Leduc MS, Korstanje R, Paigen B, Churchill GA.
A Bayesian Framework for Inference of the Genotype-Phenotype Map for Segregating Populations
Genetics. 2011 Apr;187(4):1163-70. PMCID: PMC3070524 [ Full Text ] [ datasets ]

Mathes WF, Aylor DL, Miller DR, Churchill GA, Chesler EJ, de Villena FP, Threadgill DW, Pomp D.
Architecture of energy balance traits in emerging lines of the Collaborative Cross
Am J Physiol Endocrinol Metab. 2011 Jun;300(6):E1124-34. PMCID: PMC3118585 [Available on 2012/6/1] [ datasets ]

Vedell PT, Svenson KL, Churchill GA.
Stochastic Variation of Transcript Abundance in C57BL/6J mice
BMC Genomics. 2011 Mar 30;12(1):167. PMCID: PMC3082245 [ Full Text ] [ datasets ]

Yang H, Wang JR, Didion JP, Buus RJ, Bell TA, Welsh CE, Bonhomme F, Yu AH, Nachman MW, Pialek J, Tucker P, Boursot P, McMillan L, Churchill GA, de Villena FP.
Subspecific origin and haplotype diversity in the laboratory mouse
Nat Genet. 2011 May 29;43(7):648-55. PMCID: PMC3125408 [ Full Text ] [ News Article ] [ datasets ]


Hageman RS, Wagener A, Hantschel C, Svenson KL, Churchill GA, Brockmann GA.
High-fat diet leads to tissue-specific changes reflecting risk factors for diseases in DBA/2J mice
Physiol Genomics. 2010 Jun;42(1):55-66. PMCID: PMC2888560 [ Full Text ] [ datasets ]

Hutchins LN, Ding Y, Szatkiewicz JP, Smith RV, Yang H, de Villena FP, Churchill GA, Graber JH.
CGDSNPdb: a database resource for error-checked and imputed mouse SNPs
Database (Oxford). 2010 Jul 6;2010:baq008. Print 2010. PMCID: PMC2911843. [ Full Text ] [ datasets 1 ] [ datasets 2 ]

Woo YH, Walker M, Churchill GA.
Coordinated expression domains in mammalian genomes
PLoS One. 2010 Aug 18;5(8):e12158. PMCID: PMC2923606. [ Full Text ] [ datasets ]


Burgess-Herbert SL, Tsaih SW, Stylianou IM, Walsh K, Cox AJ, Paigen B.
An experimental assessment of in silico haplotype association mapping in laboratory mice
BMC Genet. 2009 Dec 9;10:81. PMCID: PMC2797012. [ Full Text ] [ datasets ]

Shockley KR, Lazarenko OP, Czernik PJ, Rosen CJ, Churchill GA, Lecka-Czernik B.
PPARgamma2 nuclear receptor controls multiple regulatory pathways of osteoblast differentiation from marrow mesenchymal stem cells
J Cell Biochem. 2009 Feb 1;106(2):232-46. PMCID: PMC2745312. [ Full Text ] [ datasets ]

Shockley KR, Witmer D, Burgess-Herbert SL, Paigen B, Churchill GA.
The Effects of Atherogenic Diet on Hepatic Gene Expression Across Mouse Strains
Physiol Genomics. 2009 Nov 6;39(3):172-82. PMCID: PMC2789673. [ Full Text ] [ datasets ]

Yang H, Ding Y, Hutchins LN, Szatkiewicz J, Bell TA, Paigen BJ, Graber JH, de Villena FP, Churchill GA.
A customized and versatile high-density genotyping array for the mouse
Nat Methods. 2009 Sep;6(9):663-6. PMCID: PMC2735580. [ Full Text ] [ datasets 1 ] [ datasets 2 ]


Szatkiewicz JP, Beane GL, Ding Y, Hutchins L, Pardo-Manuel de Villena F, Churchill GA.
An imputed genotype resource for the laboratory mouse
Mamm Genome. 2008 Mar;19(3):199-208. PMCID: PMC2725522. [ Full Text ] [ datasets ]


Shockley KR, Rosen CJ, Churchill GA, Lecka-Czernik B.
PPARgamma2 Regulates a Molecular Signature of Marrow Mesenchymal Stem Cells
PPAR Res. 2007;2007:81219. PMCID: PMC2234088. [ Full Text ] [ datasets ]

Svenson KL, Von Smith R, Magnani PA, Suetin HR, Paigen B, Naggert JK, Li R, Churchill GA, Peters LL.
Multiple trait measurements in 43 inbred mouse strains capture the phenotypic diversity characteristic of human populations
J Appl Physiol. 2007 Jun;102(6):2369-78. [ Full Text ] [ datasets ]

Yang H, Churchill G.
Estimating p-values in small microarray experiments
Bioinformatics. 2007 Jan 1;23(1):38-43. [ Full Text ] [ datasets ]


Li R, Tsaih SW, Shockley K, Stylianou IM, Wergedal J, Paigen B, Churchill GA.
Structural model analysis of multiple quantitative traits
PLoS Genet. 2006 Jul;2(7):e114. PMCID: PMC1513264 [ Full Text ] [ datasets ]