The Jackson Laboratory
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The Jackson Laboratory

The Center for Genome Dynamics

at The Jackson Laboratory

  • Analytical Tools
    Genome Navigator Mouse Phylogeny Viewer Interval Calculator TreeQA Srain Survey GEM SNP Database Imputed SNP Resource Mouse Map Converter MouseDivGeno SNPtools Other Online Tools Other Downloadable Tools
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Single Nucleotide Polymorphisms (SNPs)

Datasets Available to Download ( reverse chronological order )

Genetic analysis of hematological parameters in incipient lines of the Collaborative Cross

Diversity Outcross (DO) QTL Mapping data - high fat diet, multiple phenotypes

Imputed Mouse SNP Resource - 88 classical inbred strains (Wang et al. 2012)

Genome-wide association mapping of quantitative traits in NMRI outbred mice

Genetic analysis of complex traits in the emerging collaborative cross – white spot, body weight and liver gene expression

Architecture of energy balance traits in emerging lines of the Collaborative Cross – 15 metabolism- and exercise-related phenotypes

Genotypes of 36 wild caught mice, 62 wild derived laboratory strains and 100 classical strains

SNP database processing files - Center for Genome Dynamics SNP Database (CGDSNPdb)

Imputed SNP files - Center for Genome Dynamics SNP Database (CGDSNPdb)

In silico haplotype association mapping in laboratory mice - high density lipoprotein cholesterol (HDL) and red blood cell count (RBC)

Genotypes of 136 DNA samples - Original Training Set for the Mouse Diversity Array

Imputed genotype resource - 74 inbred mouse strains (Szatkiewicz et al. 2008)

70K SNP set in NCBI mouse build 36

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