Genome Interval Overlap Calculator Help
to return to the Interval Overlap
This web-application can be used to calculate overlap between two
genome interval sets defined by two CSV files.
Overlap Header Name to Generate: this is the header name that
will be used in the CSV file generated by this application
Interval CSV File to Test: one of two interval input files.
The file generated by this utility will be the identical to
this input file except that a new "overlap" column will be
generated which contains a value [0, 1] which determines the
amount of overlap between the interval for each row versus
the "Interval CSV File to Test Against"
Chromosome # Header Name: the chromosome name used in the header
row for the respective input file. The values in this column
should be an integer in the range [1, 20]
Interval Start Header Name: the interval start start position
in base pairs. The values in this column should be a positive
Interval Extent Header Name: the interval extent in base pairs.
The values in this column should be a positive integer.
Interval CSV File to Test Against: this is the CSV file that
describes the interval set that the intervals from
"Interval CSV File to Test" will be tested against. The
Header Name parameters for this file are the same as the ones
used for the "Interval CSV File to Test".
Sample Data Using Default Header Names
Sample Input CSV File to Test:
# Fake gene data
Sample Input CSV File to Test Against:
# Fake Identical by state regions for C57BL/6J and CE/J
# Genome Data Used: Imputed SNP Data Lifted to Build 37 Coordinates (Unvalidated)
# Minimum Extent in SNPs: 10
# Minimum Extent in Base Pairs: 100000
Sample Result CSV: