Data*

Markers

• Mit Marker DB: a database of mit markers w bp and cM positions for build 33, 35, and 36

HAM

• HDL_HAM_male: HAM results for HDL cholesterol in males

SNPs

• Imputed genotype resource, 74 strains, 7,870,134 SNPs (Version 1.1)
  For details see Szatkiewicz JP, Beane GL, Ding Y, Hutchins L, Pardo-Manuel de Villena F, Churchill GA. (2008) "An imputed genotype resource for the laboratory mouse". Mamm Genome. 2008 Feb 27 (Epub ahead of print)

  • Version 1.0: Imputed genotype resource, 51 strains, 7,870,134 SNPs
    For details see Szatkiewicz et. al. "An imputed genotype resource for the laboratory mouse" (submitted).

• 67 Strain, ~11,300 SNP LD Map Data (Build 34 coords)

• Perlegen Science: Mouse SNP and Genotype Data Download http://mouse.perlegen.com/mouse/download.html

• Broad SNP Database http://www.broad.mit.edu/snp/mouse

• Oxford SNP data: Wellcome-CTC Mouse Strain SNP Genotype Set http://www.well.ox.ac.uk/mouse/INBREDS/

Genes

• UCSC Gene Data of mouse genome build 36 known to UCSC http://genome.ucsc.edu/cgi-bin/hgTables?command=start

• CGD Genome browser

Expression

• SYMatlas: Genomics Institute of the Novartis Research Foundation: HG_U133A/GNF1H and GNF1M Tissue Atlas Datasets. Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB (2004) A gene atlas of the mouse and human protein-encoding transcriptomes http://symatlas.gnf.org/SymAtlas/

• QTL mapping
  • Marker regression programs
  • Pseudomarker programs
  • R/qtl programs
  • J/qtl
• Gene expression
  • MAANOVA (Matlab version)
  • R/maanova
  • J/maanova

[This is a mirror of The Jackson Laboratory site's Software for Gary Churchill's Statistical Genetics Group.]