MouseDivGeno R Package

This version does the following:

  • genotype/vinotype Mouse Diversity Array CEL files
  • generate LRR and BAF output from CEL files which is suitable as input for the PennCNV program
  • generate CNV calls using the simpleCNV function

To install on mac or linux you can enter the following command in your terminal: 

    R CMD INSTALL MouseDivGeno_1.0.4.tar.gz

To install on windows start R and use the "packages->Install package(s) from local zip files..." menu item

Warranty Disclaimer and Copyright Notice

The Jackson Laboratory makes no representation about the suitability or accuracy of this software for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software will not infringe any third party patents, copyrights, trademarks, or other rights. The software are provided "as is".

This software is provided to enhance knowledge and encourage progress in the scientific community. This is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

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